PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.C03153.1.p
Common NameEUGRSUZ_C03153, LOC104437928
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 237aa    MW: 26840.2 Da    PI: 4.8961
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.C03153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++ Ed++l+d+vk +G g W ++ +  g++R++k+c++rw++yl
  Eucgr.C03153.1.p 16 KGVWSALEDQILIDYVKVHGQGKWGKVRKVTGLRRCGKSCRLRWLNYL 63
                      799*******************************************97 PP

2Myb_DNA-binding51.81.8e-1669112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  Eucgr.C03153.1.p  69 RGNISLEEEELIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNS 112
                       78999*****************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7171163IPR017930Myb domain
SuperFamilySSF466891.39E-2814110IPR009057Homeodomain-like
SMARTSM007171.4E-131565IPR001005SANT/Myb domain
PfamPF002491.1E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211870IPR009057Homeodomain-like
CDDcd001675.49E-91963No hitNo description
PROSITE profilePS5129425.63864118IPR017930Myb domain
SMARTSM007179.4E-1668116IPR001005SANT/Myb domain
PfamPF002491.7E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2571119IPR009057Homeodomain-like
CDDcd001675.15E-1073111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRNPSSGKD GLKLKKGVWS ALEDQILIDY VKVHGQGKWG KVRKVTGLRR CGKSCRLRWL  60
NYLRPDIKRG NISLEEEELI IRLHKLLGNR WALIAGRLPG RTDNEIKNYW NSTIKKKLVQ  120
ENGDQPMNSK WEDDKPLNET ATAESQGDAH RESKPCNSEG VVSDRMMESI EEKGEGGDCE  180
DDTISWENMM MDLNVEDMCM SENQHSELFE GNEDGGNQNG WISEEMLSTW VAELLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141185108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.C03153.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049278.11e-172PREDICTED: transcription factor WER-like
SwissprotO496081e-54MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A059CTT81e-172A0A059CTT8_EUCGR; Uncharacterized protein
STRINGVIT_04s0008g01820.t016e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.16e-42myb domain protein 32